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ADP RUN Powered by ADP vs Paychex Flex

The short answer

RUN Powered by ADP sells four packages, from Essential Payroll to HR Pro Payroll & HR, by quote. Paychex Flex publishes one entry price, Flex Essentials at $39 a month plus $5 per employee for businesses with fewer than 20 workers, and quotes its Basic to Complete packages.

By LeadChange Research TeamUpdated Facts checked
Best for
Small businesses paying 1 to 49 employees, including owners who pay only themselves

Choose ADP RUN Powered by ADP if

  • You want to run payroll by phone call as well as online or in the app.
  • You want legal assistance and a learning management system in the top package (HR Pro).
  • You export the general ledger to Wave or Creative Solutions as well as QuickBooks or Xero.
  • You want recurring payroll to run on its own (RUN & DONE).
Starting price
$39/mo + $5/employee/mo
Best for
Businesses with fewer than 20 employees that want a listed price

Choose Paychex Flex if

  • You have fewer than 20 employees and want a published price: $39 a month plus $5 per employee.
  • You run extra or off-cycle payrolls: Paychex Flex includes unlimited payroll processing.
  • You want employees to review their own paychecks before payroll runs (Paychex Pre-check).
  • You need a REST API with webhooks.

LeadChange Score: editorial assessment based on public information.

Scorecard

ADP RUN Powered by ADP wins 0Paychex Flex wins 22 ties

ADP RUN Powered by ADP vs Paychex Flex by dimension
DimensionADP RUN Powered by ADPPaychex Flex
PricingPaychex Flex lists Flex Essentials at $39 a month plus $5 per employee; its other packages are quoted, and tax administration, W-2s and 1099s may cost extra on Essentials. ADP RUN quotes every package and charges more as payroll frequency rises. Paychex Promise (delay the payroll debit up to 7 days): free for the first 3 months, then $99 per year, Paychex Flex Essentials: payroll tax administration "additional fees may apply"; W-2s and 1099s at additional cost, Package add-ons (priced by quote): Time & Attendance, HR Analytics, Talent Management, Business Insurance, Retirement Plans, Health Insurance, Workers’ Comp, HR Consulting, Assisted Set Up and Managed Set Up are add-ons on lower packages; Enhanced and Premium Customer Support are add-ons on lower packagesQuote only$39/mo + $5/employee/mo
CapabilitiesBoth cover payroll, tax filing, contractor payments, HR tools and add-on benefits. ADP RUN adds bill pay and invoicing and applicant tracking by CareerPlug; Paychex Flex adds time and attendance and workers' compensation modules. Payroll, Payroll tax filing, Contractor payments, HR support (HR HelpDesk), Recruiting (ZipRecruiter; applicant tracking by CareerPlug in HR Pro), New hire onboarding, Learning management (HR Pro), Garnishment payment service, State Unemployment Insurance management, Bill pay and invoicing, Time and attendance (add-on)10 of 12 core capabilities12 of 12 core capabilities
IntegrationsPaychex Flex offers a REST API with webhooks and lists QuickBooks, Sage Intacct, Xero, NetSuite, When I Work and 7shifts among its integrations. ADP RUN connects to QuickBooks, Xero, Wave, Creative Solutions, Clover and ZipRecruiter. REST3 documented15 documented
Fit and supportADP RUN offers 24/7 payroll support by phone or chat; Paychex lists 24/7 payroll support, with a payroll specialist on its Complete package. 24/7 payroll support by phone or chatSmall businessesSmall businesses, mid-market companies

Key differences

Where ADP RUN Powered by ADP and Paychex Flex differ (8)
AttributeADP RUN Powered by ADPPaychex Flex
Pricing modelQuote onlyBase fee + per employee
Price transparencyQuote onlyPartly published
Best forSmall businessesSmall businesses, mid-market companies
Mobile appsRUN Powered by ADP app (iOS), RUN Powered by ADP app (Android)Paychex Flex app (iOS), Paychex Flex app (Android), Paychex Flex Time Kiosk app
Support channelsPhone, chat, email (Payroll Center), in-product help center, HR HelpDesk by phone and email (Complete and HR Pro)Phone, chat, email, in-platform help center
Typical implementationSome customers are up and running within 2 days; others transition over a period of weeksSelf-guided online setup; first payroll as soon as the same day
Founded19491971
HeadquartersRoseland, NJ, USRochester, New York and Cincinnati, Ohio, US (dual headquarters)
Show 6 attributes where they are the same
Where they are the same (6)
AttributeADP RUN Powered by ADPPaychex Flex
Minimum employees11
DeploymentCloud, mobileCloud, mobile
Open API
Automatic tax filing
Contractor payments
OwnershipPublicly tradedPublicly traded

Analysis by dimension

Pricing. Paychex Flex lists Flex Essentials at $39 a month plus $5 per employee; its other packages are quoted, and tax administration, W-2s and 1099s may cost extra on Essentials. ADP RUN quotes every package and charges more as payroll frequency rises.

Capabilities. Both cover payroll, tax filing, contractor payments, HR tools and add-on benefits. ADP RUN adds bill pay and invoicing and applicant tracking by CareerPlug; Paychex Flex adds time and attendance and workers' compensation modules.

Integrations. Paychex Flex offers a REST API with webhooks and lists QuickBooks, Sage Intacct, Xero, NetSuite, When I Work and 7shifts among its integrations. ADP RUN connects to QuickBooks, Xero, Wave, Creative Solutions, Clover and ZipRecruiter.

Fit and support. ADP RUN offers 24/7 payroll support by phone or chat; Paychex lists 24/7 payroll support, with a payroll specialist on its Complete package.

Security. Neither names a security certification on the product pages we reviewed.

Neither one?

Patriot Payroll

Patriot Payroll has the highest LeadChange Score in Payroll Software after excluding these two (9.3/10).

From $17/mo + $4/employee/mo

Frequently asked questions

Who is cheaper, ADP or Paychex?

Only Paychex publishes a price: Flex Essentials costs $39 a month plus $5 per employee, or $89 a month for 10 employees, before tax administration and year-end forms. ADP quotes RUN, so compare written quotes for the same headcount and pay frequency.

Does Paychex Flex charge for extra payroll runs?

No. Paychex Flex includes unlimited payroll processing with no additional fees. ADP RUN does not include unlimited runs: its payroll fees increase with payroll frequency.

Do ADP RUN and Paychex Flex check payroll with AI?

Yes. ADP Assist flags payroll errors before payroll runs and imports timesheets; Paychex’s Intelligent Pay Cycle flags issues before they cause delays and suggests fixes for missing punches.

How quickly can I start with ADP RUN or Paychex Flex?

Paychex Flex offers self-guided online setup with a first payroll as soon as the same day. ADP says some RUN customers are running within 2 days and others move over a few weeks.

Do ADP RUN and Paychex Flex offer health insurance and 401(k)?

Both sell them as add-ons. ADP RUN offers group health insurance, retirement plans through ADP Retirement Services and workers' compensation; Paychex Flex offers 401(k) plans, group health insurance and a free perks marketplace for employees.

Where are ADP and Paychex based?

ADP, founded in 1949, is headquartered in Roseland, New Jersey. Paychex, founded in 1971, has dual headquarters in Rochester, New York and Cincinnati, Ohio.

ADP RUN Powered by ADP or Paychex Flex? Your answer in 3 questions

Your team size, what matters most and your role: see which one fits more of your answers, from verified facts and list prices. Then, if you like, ask to hear from both.

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What the LeadChange Score means

A 0–10 editorial assessment built only from verified facts, across six weighted dimensions: capabilities, pricing, integrations, security, fit and support, and data confidence.

Payments, commissions and lead fees are never inputs.